1 Response_reg#1
5-111 aa · 107 aa · 20.2% of protein
Raw token
Response_reg:5:5.16e-26:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS00625
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS00625Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage137 / 529 aa (25.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
487-516 aa · 30 aa · 5.7% of protein
Raw token
HTH_AraC:487:0.00000021:516:30:42- Raw architecture: Response_reg:5:5.16e-26:111:107:111#HTH_AraC:487:0.00000021:516:30:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133755-137157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_00625RefSeq proteinWP_117630143.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00005Context members
DXC88_RS00625DXC88_RS00630
Partner locus tags
DXC88_RS00625DXC88_RS00630
Partner old locus tags
DXC88_00625DXC88_00630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630143.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PGW0Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PGW0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS00625Primary locus identifier stored in the genes table.
Old locus tagDXC88_00625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval133 755-135 344 nt1 590 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 755-137 157 ntGCF_003437645::NZ_QSRE01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span133 755-137 157 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 755 nt137 157 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS00625GCF_003437645#DXC88_RS00625
RRunclassifiedCurrent focus
133 755-135 344 nt · Forward (+)
DXC88_RS00630GCF_003437645#DXC88_RS00630
HKClassic
135 337-137 157 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS00625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113205
Simplified PFAM architecture for RROC_0113205
PFAM domain coverage: 188 / 529 aa (35.5%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[439-517]
- Domain count: 2
- Matched identifier: RROC_0113205
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 439-517 ; HTH_18 439-517
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS00625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key