1 dCache_1#1
123-271 aa · 149 aa · 17.7% of protein
Raw token
dCache_1:123:0.00000705:271:152:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS00395
Histidine kinase, Hybrid
Hungatella hathewayi · GCF_003437645
ClassHKTypeHybridLength844 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS00395Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length844 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage452 / 844 aa (53.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa844 aa
Domain-by-domain annotation4 items
2 HisKA#2
460-526 aa · 67 aa · 7.9% of protein
Raw token
HisKA:460:1.82e-16:526:67:643 HATPase_c#3
572-690 aa · 119 aa · 14.1% of protein
Raw token
HATPase_c:572:8.68e-31:690:119:1094 Response_reg#4
717-833 aa · 117 aa · 13.9% of protein
Raw token
Response_reg:717:6.39e-27:833:117:111- Raw architecture: dCache_1:123:0.00000705:271:152:195#HisKA:460:1.82e-16:526:67:64#HATPase_c:572:8.68e-31:690:119:109#Response_reg:717:6.39e-27:833:117:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span79989-82523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_00395RefSeq proteinWP_117630121.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00003Context members
DXC88_RS00395
Partner locus tags
DXC88_RS00395
Partner old locus tags
DXC88_00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630121.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PH14Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PH14_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS00395Primary locus identifier stored in the genes table.
Old locus tagDXC88_00395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval79 989-82 523 nt2 535 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 989-82 523 ntGCF_003437645::NZ_QSRE01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span79 989-82 523 nt2 535 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 989 nt82 523 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS00395GCF_003437645#DXC88_RS00395
HKHybridCurrent focus
79 989-82 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS00395The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0502800
Simplified PFAM architecture for HKOC_0502800
PFAM domain coverage: 301 / 844 aa (35.7%)
1 aa844 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[460-526] | HATPase_c[572-689] | Response_reg[717-832]
- Domain count: 3
- Matched identifier: HKOC_0502800
- Positioned domains: HisKA 460-526 ; HATPase_c 572-689 ; Response_reg 717-832
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key