1 Response_reg#1
4-117 aa · 114 aa · 32.9% of protein
Raw token
Response_reg:4:2.35e-23:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS24305
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS24305Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 347 aa (56.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
253-293 aa · 41 aa · 11.8% of protein
Raw token
HTH_AraC:253:0.00000586:293:41:423 HTH_AraC#3
304-344 aa · 41 aa · 11.8% of protein
Raw token
HTH_AraC:304:0.0000000427:344:43:42- Raw architecture: Response_reg:4:2.35e-23:117:114:111#HTH_AraC:253:0.00000586:293:41:42#HTH_AraC:304:0.0000000427:344:43:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000019.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17097-19940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_24290RefSeq proteinWP_117632938.1
Context group ID
GCF_003437645::NZ_QSRE01000019.1::G00062Context members
DXC88_RS24305DXC88_RS24310
Partner locus tags
DXC88_RS24305DXC88_RS24310
Partner old locus tags
DXC88_24290DXC88_24295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632938.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P3D6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P3D6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS24305Primary locus identifier stored in the genes table.
Old locus tagDXC88_24290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000019.1Sequence record reported by the local genomic context database.
Genomic interval17 097-18 140 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 097-19 940 ntGCF_003437645::NZ_QSRE01000019.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000019.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000019.1All displayed genes belong to this local TCS context.
Neighborhood span17 097-19 940 nt2 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 097 nt19 940 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS24305GCF_003437645#DXC88_RS24305
RRunclassifiedCurrent focus
17 097-18 140 nt · Reverse (-)
DXC88_RS24310GCF_003437645#DXC88_RS24310
HKClassic
18 147-19 940 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS24305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0488828
Simplified PFAM architecture for RROC_0488828
PFAM domain coverage: 192 / 347 aa (55.3%)
1 aa347 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[267-345]
- Domain count: 2
- Matched identifier: RROC_0488828
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 267-345 ; HTH_18 267-345
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS24305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key