1 HAMP#1
308-377 aa · 70 aa · 11.3% of protein
Raw token
HAMP:308:0.000000408:377:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS23250
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS23250Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 619 aa (39.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-470 aa · 79 aa · 12.8% of protein
Raw token
His_kinase:392:1.03e-25:470:80:803 HATPase_c#3
493-590 aa · 98 aa · 15.8% of protein
Raw token
HATPase_c:493:0.0000078:590:99:109- Raw architecture: HAMP:308:0.000000408:377:71:69#His_kinase:392:1.03e-25:470:80:80#HATPase_c:493:0.0000078:590:99:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000017.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94043-97421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_23235RefSeq proteinWP_181988013.1
Context group ID
GCF_003437645::NZ_QSRE01000017.1::G00058Context members
DXC88_RS23250DXC88_RS23255
Partner locus tags
DXC88_RS23250DXC88_RS23255
Partner old locus tags
DXC88_23235DXC88_23240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181988013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS23250Primary locus identifier stored in the genes table.
Old locus tagDXC88_23235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000017.1Sequence record reported by the local genomic context database.
Genomic interval94 043-95 902 nt1 860 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 043-97 421 ntGCF_003437645::NZ_QSRE01000017.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000017.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000017.1All displayed genes belong to this local TCS context.
Neighborhood span94 043-97 421 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 043 nt97 421 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS23250GCF_003437645#DXC88_RS23250
HKClassicCurrent focus
94 043-95 902 nt · Forward (+)
DXC88_RS23255GCF_003437645#DXC88_RS23255
RRunclassified
95 895-97 421 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS23250The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0975649
Simplified PFAM architecture for HKOC_0975649
PFAM domain coverage: 77 / 619 aa (12.4%)
1 aa619 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[392-468]
- Domain count: 1
- Matched identifier: HKOC_0975649
- Positioned domains: His_kinase 392-468
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS23250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key