1 HAMP#1
58-129 aa · 72 aa · 19.7% of protein
Raw token
HAMP:58:0.00000000172:129:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS14425
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS14425Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 365 aa (67.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA#2
136-200 aa · 65 aa · 17.8% of protein
Raw token
HisKA:136:9.62e-20:200:65:643 HATPase_c#3
245-354 aa · 110 aa · 30.1% of protein
Raw token
HATPase_c:245:2.13e-31:354:111:109- Raw architecture: HAMP:58:0.00000000172:129:72:69#HisKA:136:9.62e-20:200:65:64#HATPase_c:245:2.13e-31:354:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000008.1::G00151
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139082-140847Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_14415RefSeq proteinWP_117631978.1
Context group ID
GCF_003437645::NZ_QSRE01000008.1::G00151Context members
DXC88_RS14420DXC88_RS14425
Partner locus tags
DXC88_RS14420DXC88_RS14425
Partner old locus tags
DXC88_14410DXC88_14415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631978.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P4R4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P4R4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS14425Primary locus identifier stored in the genes table.
Old locus tagDXC88_14415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000008.1Sequence record reported by the local genomic context database.
Genomic interval139 750-140 847 nt1 098 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 082-140 847 ntGCF_003437645::NZ_QSRE01000008.1::G00151
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000008.1::G00151Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000008.1All displayed genes belong to this local TCS context.
Neighborhood span139 082-140 847 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 082 nt140 847 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS14420GCF_003437645#DXC88_RS14420
RROmpR
139 082-139 753 nt · Forward (+)
DXC88_RS14425GCF_003437645#DXC88_RS14425
HKClassicCurrent focus
139 750-140 847 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719936
Simplified PFAM architecture for HKOC_2719936
PFAM domain coverage: 173 / 365 aa (47.4%)
1 aa365 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[136-199] | HATPase_c[246-354]
- Domain count: 2
- Matched identifier: HKOC_2719936
- Positioned domains: HisKA 136-199 ; HATPase_c 246-354
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key