1 Response_reg#1
7-120 aa · 114 aa · 9.0% of protein
Raw token
Response_reg:7:2.6e-30:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS13165
Response regulator, RpfG family
Hungatella hathewayi · GCF_003437645
ClassRRTypeRpfGLength1272 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS13165Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHDPAS_3GGDEF
Protein length1272 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage577 / 1272 aa (45.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,2 PAS_3,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1272 aa
Domain-by-domain annotation5 items
2 HD#2
167-300 aa · 134 aa · 10.5% of protein
Raw token
HD:167:0.00000000000081:300:134:1103 PAS_3#3
546-627 aa · 82 aa · 6.4% of protein
Raw token
PAS_3:546:0.000000000417:627:83:894 PAS_3#4
672-761 aa · 90 aa · 7.1% of protein
Raw token
PAS_3:672:0.0000000000287:761:94:895 GGDEF#5
778-934 aa · 157 aa · 12.3% of protein
Raw token
GGDEF:778:1.91e-41:934:160:160- Raw architecture: Response_reg:7:2.6e-30:120:115:111#HD:167:0.00000000000081:300:134:110#PAS_3:546:0.000000000417:627:83:89#PAS_3:672:0.0000000000287:761:94:89#GGDEF:778:1.91e-41:934:160:160
- Domain description: 1 Response_reg,1 HD,2 PAS_3,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000007.1::G00142
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164117-170516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_13155RefSeq proteinWP_117631703.1
Context group ID
GCF_003437645::NZ_QSRE01000007.1::G00142Context members
DXC88_RS13165DXC88_RS13170
Partner locus tags
DXC88_RS13165DXC88_RS13170
Partner old locus tags
DXC88_13155DXC88_13160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631703.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P7Z2Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P7Z2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS13165Primary locus identifier stored in the genes table.
Old locus tagDXC88_13155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000007.1Sequence record reported by the local genomic context database.
Genomic interval164 117-167 935 nt3 819 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span164 117-170 516 ntGCF_003437645::NZ_QSRE01000007.1::G00142
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000007.1::G00142Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000007.1All displayed genes belong to this local TCS context.
Neighborhood span164 117-170 516 nt6 400 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 117 nt170 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS13165GCF_003437645#DXC88_RS13165
RRRpfGCurrent focus
164 117-167 935 nt · Forward (+)
DXC88_RS13170GCF_003437645#DXC88_RS13170
HKHybrid
167 922-170 516 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS13165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + PAS_3 + PAS_3 + GGDEF + PAS_96 domains in the representative PFAM annotation.
PFAM architecture for RROC_0005796
Simplified PFAM architecture for RROC_0005796
PFAM domain coverage: 670 / 1272 aa (52.7%)
1 aa1272 aa
Response_regHD_5PAS_3PAS_3GGDEFPAS_9
- Simplified architecture: Response_reg + HD_5 + PAS_3 + PAS_3 + GGDEF + PAS_9
- Raw architecture: Response_reg[7-120] | HD_5[183-321] | PAS_3[546-627] | PAS_3[673-761] | GGDEF[778-933] | PAS_9[1158-1247]
- Domain count: 6
- Matched identifier: RROC_0005796
- Positioned domains: Response_reg 7-120 ; Response_reg 7-120 ; HD_5 183-321 ; HD_5 183-321 ; PAS_3 546-627 ; PAS_3 546-627 ; PAS_3 673-761 ; PAS_3 673-761 ; GGDEF 778-933 ; GGDEF 778-933 ; PAS_9 1158-1247 ; PAS_9 1158-1247
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS13165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key