1 HAMP#1
307-382 aa · 76 aa · 12.4% of protein
Raw token
HAMP:307:0.000000341:382:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS10220
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength612 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS10220Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length612 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 612 aa (42.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa612 aa
Domain-by-domain annotation3 items
2 His_kinase#2
401-476 aa · 76 aa · 12.4% of protein
Raw token
His_kinase:401:5.07e-20:476:76:803 HATPase_c#3
496-602 aa · 107 aa · 17.5% of protein
Raw token
HATPase_c:496:0.0000000017:602:107:109- Raw architecture: HAMP:307:0.000000341:382:79:69#His_kinase:401:5.07e-20:476:76:80#HATPase_c:496:0.0000000017:602:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000005.1::G00130
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83098-85711Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_10215RefSeq proteinWP_117631141.1
Context group ID
GCF_003437645::NZ_QSRE01000005.1::G00130Context members
DXC88_RS10220DXC88_RS10225
Partner locus tags
DXC88_RS10220DXC88_RS10225
Partner old locus tags
DXC88_10215DXC88_10220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631141.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PB39Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PB39_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS10220Primary locus identifier stored in the genes table.
Old locus tagDXC88_10215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000005.1Sequence record reported by the local genomic context database.
Genomic interval83 098-84 936 nt1 839 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 098-85 711 ntGCF_003437645::NZ_QSRE01000005.1::G00130
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000005.1::G00130Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000005.1All displayed genes belong to this local TCS context.
Neighborhood span83 098-85 711 nt2 614 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 098 nt85 711 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS10220GCF_003437645#DXC88_RS10220
HKClassicCurrent focus
83 098-84 936 nt · Forward (+)
DXC88_RS10225GCF_003437645#DXC88_RS10225
RRunclassified
84 920-85 711 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS10220The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0998060
Simplified PFAM architecture for HKOC_0998060
PFAM domain coverage: 183 / 612 aa (29.9%)
1 aa612 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[401-476] | HATPase_c[496-602]
- Domain count: 2
- Matched identifier: HKOC_0998060
- Positioned domains: His_kinase 401-476 ; HATPase_c 496-602
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS10220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key