1 HAMP#1
298-367 aa · 70 aa · 11.8% of protein
Raw token
HAMP:298:0.00000000136:367:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS03080
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS03080Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 591 aa (43.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:382:9.47e-25:461:80:803 HATPase_c#3
478-586 aa · 109 aa · 18.4% of protein
Raw token
HATPase_c:478:0.00000000151:586:112:109- Raw architecture: HAMP:298:0.00000000136:367:70:69#His_kinase:382:9.47e-25:461:80:80#HATPase_c:478:0.00000000151:586:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span682135-685463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_03080RefSeq proteinWP_117630393.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00023Context members
DXC88_RS03080DXC88_RS03085
Partner locus tags
DXC88_RS03080DXC88_RS03085
Partner old locus tags
DXC88_03080DXC88_03085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630393.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PEW1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PEW1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS03080Primary locus identifier stored in the genes table.
Old locus tagDXC88_03080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval682 135-683 910 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span682 135-685 463 ntGCF_003437645::NZ_QSRE01000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span682 135-685 463 nt3 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
682 135 nt685 463 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS03080GCF_003437645#DXC88_RS03080
HKClassicCurrent focus
682 135-683 910 nt · Forward (+)
DXC88_RS03085GCF_003437645#DXC88_RS03085
RRunclassified
683 907-685 463 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03080The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1106395
Simplified PFAM architecture for HKOC_1106395
PFAM domain coverage: 237 / 591 aa (40.1%)
1 aa591 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[317-367] | His_kinase[382-459] | HATPase_c[478-585]
- Domain count: 3
- Matched identifier: HKOC_1106395
- Positioned domains: HAMP 317-367 ; His_kinase 382-459 ; HATPase_c 478-585
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key