1 HAMP#1
159-227 aa · 69 aa · 14.9% of protein
Raw token
HAMP:159:0.0000000541:227:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS02690
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS02690Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage213 / 463 aa (46.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-299 aa · 62 aa · 13.4% of protein
Raw token
HisKA:238:0.0000000000853:299:62:643 HATPase_c#3
351-432 aa · 82 aa · 17.7% of protein
Raw token
HATPase_c:351:0.000000382:432:98:109- Raw architecture: HAMP:159:0.0000000541:227:70:69#HisKA:238:0.0000000000853:299:62:64#HATPase_c:351:0.000000382:432:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span593263-595360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_02690RefSeq proteinWP_243007808.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00021Context members
DXC88_RS02685DXC88_RS02690
Partner locus tags
DXC88_RS02685DXC88_RS02690
Partner old locus tags
DXC88_02685DXC88_02690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243007808.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS02690Primary locus identifier stored in the genes table.
Old locus tagDXC88_02690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval593 969-595 360 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span593 263-595 360 ntGCF_003437645::NZ_QSRE01000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span593 263-595 360 nt2 098 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
593 263 nt595 360 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS02685GCF_003437645#DXC88_RS02685
RROmpR
593 263-593 955 nt · Forward (+)
DXC88_RS02690GCF_003437645#DXC88_RS02690
HKClassicCurrent focus
593 969-595 360 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466285#DXD79_RS01320Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719395
Simplified PFAM architecture for HKOC_1719395
PFAM domain coverage: 106 / 470 aa (22.6%)
1 aa470 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[189-233] | HisKA[246-306]
- Domain count: 2
- Matched identifier: HKOC_1719395
- Positioned domains: HAMP 189-233 ; HisKA 246-306
Cluster members and taxonomy
Representative gene: GCF_003466285#DXD79_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key