1 HAMP#1
166-234 aa · 69 aa · 14.7% of protein
Raw token
HAMP:166:0.0000000523:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD79_RS01320
Histidine kinase, Classic
Hungatella hathewayi · GCF_003466285
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466285#DXD79_RS01320Stable P2CS identifier used across views.
GenomeGCF_003466285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage213 / 470 aa (45.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-306 aa · 62 aa · 13.2% of protein
Raw token
HisKA:245:0.0000000000851:306:62:643 HATPase_c#3
358-439 aa · 82 aa · 17.4% of protein
Raw token
HATPase_c:358:0.000000347:439:98:109- Raw architecture: HAMP:166:0.0000000523:234:70:69#HisKA:245:0.0000000000851:306:62:64#HATPase_c:358:0.000000347:439:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466285::NZ_QSON01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span295202-297299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD79_01320RefSeq proteinWP_117630357.1
Context group ID
GCF_003466285::NZ_QSON01000001.1::G00010Context members
DXD79_RS01320DXD79_RS01325
Partner locus tags
DXD79_RS01320DXD79_RS01325
Partner old locus tags
DXD79_01320DXD79_01325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630357.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PDE5Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PDE5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD79_RS01320Primary locus identifier stored in the genes table.
Old locus tagDXD79_01320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSON01000001.1Sequence record reported by the local genomic context database.
Genomic interval295 202-296 614 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span295 202-297 299 ntGCF_003466285::NZ_QSON01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466285::NZ_QSON01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSON01000001.1All displayed genes belong to this local TCS context.
Neighborhood span295 202-297 299 nt2 098 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
295 202 nt297 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD79_RS01320GCF_003466285#DXD79_RS01320
HKClassicCurrent focus
295 202-296 614 nt · Reverse (-)
DXD79_RS01325GCF_003466285#DXD79_RS01325
RROmpR
296 607-297 299 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466285#DXD79_RS01320The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719395
Simplified PFAM architecture for HKOC_1719395
PFAM domain coverage: 106 / 470 aa (22.6%)
1 aa470 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[189-233] | HisKA[246-306]
- Domain count: 2
- Matched identifier: HKOC_1719395
- Positioned domains: HAMP 189-233 ; HisKA 246-306
Cluster members and taxonomy
Representative gene: GCF_003466285#DXD79_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003466285
AssemblyASM346628v1 · Scaffoldhaploid
Genome composition7 637 491 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 297 · HK 148 · RR 146CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key