1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000485:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD18_RS12480
Histidine kinase, Classic
Dorea formicigenerans · GCF_003437485
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437485#DXD18_RS12480Stable P2CS identifier used across views.
GenomeGCF_003437485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:3.7e-30:418:110:109- Raw architecture: HisKA:197:0.0000000485:260:64:64#HATPase_c:309:3.7e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437485::NZ_QSQM01000013.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53844-55774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD18_12465RefSeq proteinWP_117606912.1
Context group ID
GCF_003437485::NZ_QSQM01000013.1::G00018Context members
DXD18_RS12480DXD18_RS12485
Partner locus tags
DXD18_RS12480DXD18_RS12485
Partner old locus tags
DXD18_12465DXD18_12470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117606912.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4L5U9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4L5U9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD18_RS12480Primary locus identifier stored in the genes table.
Old locus tagDXD18_12465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQM01000013.1Sequence record reported by the local genomic context database.
Genomic interval53 844-55 109 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 844-55 774 ntGCF_003437485::NZ_QSQM01000013.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437485::NZ_QSQM01000013.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQM01000013.1All displayed genes belong to this local TCS context.
Neighborhood span53 844-55 774 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 844 nt55 774 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD18_RS12480GCF_003437485#DXD18_RS12480
HKClassicCurrent focus
53 844-55 109 nt · Reverse (-)
DXD18_RS12485GCF_003437485#DXD18_RS12485
RROmpR
55 085-55 774 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS12480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258482
Simplified PFAM architecture for HKOC_2258482
PFAM domain coverage: 176 / 421 aa (41.8%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2258482
- Positioned domains: HisKA 196-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS12480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003437485
AssemblyASM343748v1 · Scaffoldhaploid
Genome composition2 865 423 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 84 · HK 41 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key