1 HAMP#1
85-152 aa · 68 aa · 18.0% of protein
Raw token
HAMP:85:0.0000000891:152:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD18_RS02300
Histidine kinase, Classic
Dorea formicigenerans · GCF_003437485
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437485#DXD18_RS02300Stable P2CS identifier used across views.
GenomeGCF_003437485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 378 aa (61.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
163-230 aa · 68 aa · 18.0% of protein
Raw token
HisKA:163:0.00000000000916:230:68:643 HATPase_c#3
275-369 aa · 95 aa · 25.1% of protein
Raw token
HATPase_c:275:1.19e-18:369:96:109- Raw architecture: HAMP:85:0.0000000891:152:70:69#HisKA:163:0.00000000000916:230:68:64#HATPase_c:275:1.19e-18:369:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437485::NZ_QSQM01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span479686-481484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD18_02295RefSeq proteinWP_117657011.1
Context group ID
GCF_003437485::NZ_QSQM01000001.1::G00006Context members
DXD18_RS02300DXD18_RS02305
Partner locus tags
DXD18_RS02300DXD18_RS02305
Partner old locus tags
DXD18_02295DXD18_02300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117657011.1Primary protein accession used for annex mappings.
UniProt accessionA0A415H9N9Primary UniProt accession resolved in the annex database.
UniProt IDA0A415H9N9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD18_RS02300Primary locus identifier stored in the genes table.
Old locus tagDXD18_02295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQM01000001.1Sequence record reported by the local genomic context database.
Genomic interval479 686-480 822 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span479 686-481 484 ntGCF_003437485::NZ_QSQM01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437485::NZ_QSQM01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span479 686-481 484 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
479 686 nt481 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD18_RS02300GCF_003437485#DXD18_RS02300
HKClassicCurrent focus
479 686-480 822 nt · Reverse (-)
DXD18_RS02305GCF_003437485#DXD18_RS02305
RROmpR
480 810-481 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS02300The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2628181
Simplified PFAM architecture for HKOC_2628181
PFAM domain coverage: 206 / 378 aa (54.5%)
1 aa378 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[107-151] | HisKA[164-229] | HATPase_c[278-372]
- Domain count: 3
- Matched identifier: HKOC_2628181
- Positioned domains: HAMP 107-151 ; HisKA 164-229 ; HATPase_c 278-372
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS02300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003437485
AssemblyASM343748v1 · Scaffoldhaploid
Genome composition2 865 423 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 84 · HK 41 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key