1 Response_reg#1
4-90 aa · 87 aa · 75.7% of protein
Raw token
Response_reg:4:0.000000000000253:90:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS14695
Response regulator, CheY family
Blautia obeum · GCF_003436075
ClassRRTypeCheYLength115 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436075#DXD81_RS14695Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length115 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage87 / 115 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa115 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000253:90:88:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436075::NZ_QSOL01000015.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25036-25383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_14705RefSeq proteinWP_117639758.1
Context group ID
GCF_003436075::NZ_QSOL01000015.1::G00023Context members
DXD81_RS14695
Partner locus tags
DXD81_RS14695
Partner old locus tags
DXD81_14705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117639758.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS14695Primary locus identifier stored in the genes table.
Old locus tagDXD81_14705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000015.1Sequence record reported by the local genomic context database.
Genomic interval25 036-25 383 nt348 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 036-25 383 ntGCF_003436075::NZ_QSOL01000015.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000015.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span25 036-25 383 nt348 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 036 nt25 383 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD81_RS14695GCF_003436075#DXD81_RS14695
RRCheYCurrent focus
25 036-25 383 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS14695The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2465270
Simplified PFAM architecture for RROC_2465270
PFAM domain coverage: 87 / 115 aa (75.7%)
1 aa115 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-90]
- Domain count: 1
- Matched identifier: RROC_2465270
- Positioned domains: Response_reg 4-90 ; Response_reg 4-90
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS14695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key