1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:3.04e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS14195
Response regulator NarL family
Blautia obeum · GCF_003436075
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS14195Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 206 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.2% of protein
Raw token
HTH_LUXR:150:8.67e-19:201:52:58- Raw architecture: Response_reg:3:3.04e-25:103:101:111#HTH_LUXR:150:8.67e-19:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000014.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span630-2364Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_14205RefSeq proteinWP_055066655.1
Context group ID
GCF_003436075::NZ_QSOL01000014.1::G00019Context members
DXD81_RS14195DXD81_RS14200
Partner locus tags
DXD81_RS14195DXD81_RS14200
Partner old locus tags
DXD81_14205DXD81_14210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066655.1Primary protein accession used for annex mappings.
UniProt accessionA0A174HTH2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174HTH2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS14195Primary locus identifier stored in the genes table.
Old locus tagDXD81_14205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000014.1Sequence record reported by the local genomic context database.
Genomic interval630-1 250 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span630-2 364 ntGCF_003436075::NZ_QSOL01000014.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000014.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000014.1All displayed genes belong to this local TCS context.
Neighborhood span630-2 364 nt1 735 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
630 nt2 364 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS14195GCF_003436075#DXD81_RS14195
RRNarLCurrent focus
630-1 250 nt · Reverse (-)
DXD81_RS14200GCF_003436075#DXD81_RS14200
HKClassic
1 276-2 364 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS14865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2082096
Simplified PFAM architecture for RROC_2082096
PFAM domain coverage: 155 / 206 aa (75.2%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-105] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2082096
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; GerE 150-201 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS14865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key