1 HAMP#1
184-256 aa · 73 aa · 15.3% of protein
Raw token
HAMP:184:0.00000000573:256:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS14135
Histidine kinase, Classic
Blautia obeum · GCF_003436075
ClassHKTypeClassicLength478 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS14135Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 478 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation3 items
2 His_kinase#2
273-352 aa · 80 aa · 16.7% of protein
Raw token
His_kinase:273:1.61e-30:352:80:803 HATPase_c#3
372-470 aa · 99 aa · 20.7% of protein
Raw token
HATPase_c:372:0.0000000000000102:470:104:109- Raw architecture: HAMP:184:0.00000000573:256:73:69#His_kinase:273:1.61e-30:352:80:80#HATPase_c:372:0.0000000000000102:470:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000013.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67515-70597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_14145RefSeq proteinWP_117639660.1
Context group ID
GCF_003436075::NZ_QSOL01000013.1::G00018Context members
DXD81_RS14130DXD81_RS14135
Partner locus tags
DXD81_RS14130DXD81_RS14135
Partner old locus tags
DXD81_14140DXD81_14145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117639660.1Primary protein accession used for annex mappings.
UniProt accessionA0A415HKN5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415HKN5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS14135Primary locus identifier stored in the genes table.
Old locus tagDXD81_14145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000013.1Sequence record reported by the local genomic context database.
Genomic interval69 161-70 597 nt1 437 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 515-70 597 ntGCF_003436075::NZ_QSOL01000013.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000013.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000013.1All displayed genes belong to this local TCS context.
Neighborhood span67 515-70 597 nt3 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 515 nt70 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS14130GCF_003436075#DXD81_RS14130
RRunclassified
67 515-69 164 nt · Forward (+)
DXD81_RS14135GCF_003436075#DXD81_RS14135
HKClassicCurrent focus
69 161-70 597 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS14135The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1638859
Simplified PFAM architecture for HKOC_1638859
PFAM domain coverage: 174 / 478 aa (36.4%)
1 aa478 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[274-350] | HATPase_c[374-470]
- Domain count: 2
- Matched identifier: HKOC_1638859
- Positioned domains: His_kinase 274-350 ; HATPase_c 374-470
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS14135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key