1 Response_reg#1
7-110 aa · 104 aa · 20.9% of protein
Raw token
Response_reg:7:6.58e-26:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS11095
Response regulator RpfG family
Blautia obeum · GCF_003436075
ClassRRTypeRpfGLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS11095Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 498 aa (42.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 21.5% of protein
Raw token
HD:193:0.00000000000000613:299:107:110- Raw architecture: Response_reg:7:6.58e-26:110:105:111#HD:193:0.00000000000000613:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000008.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19451-24042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_11100RefSeq proteinWP_117639144.1
Context group ID
GCF_003436075::NZ_QSOL01000008.1::G00059Context members
DXD81_RS11095DXD81_RS11100
Partner locus tags
DXD81_RS11095DXD81_RS11100
Partner old locus tags
DXD81_11100DXD81_11105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117639144.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS11095Primary locus identifier stored in the genes table.
Old locus tagDXD81_11100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000008.1Sequence record reported by the local genomic context database.
Genomic interval19 451-20 947 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 451-24 042 ntGCF_003436075::NZ_QSOL01000008.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000008.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000008.1All displayed genes belong to this local TCS context.
Neighborhood span19 451-24 042 nt4 592 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 451 nt24 042 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS11095GCF_003436075#DXD81_RS11095
RRRpfGCurrent focus
19 451-20 947 nt · Reverse (-)
DXD81_RS11100GCF_003436075#DXD81_RS11100
HKHybrid
21 091-24 042 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS11095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0160228
Simplified PFAM architecture for RROC_0160228
PFAM domain coverage: 246 / 498 aa (49.4%)
1 aa498 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[186-320]
- Domain count: 2
- Matched identifier: RROC_0160228
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 186-320 ; HD_5 186-320
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS11095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key