1 HisKA#1
265-331 aa · 67 aa · 10.5% of protein
Raw token
HisKA:265:5.79e-18:331:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS08260
Histidine kinase, Hybrid
Blautia obeum · GCF_003436075
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS08260Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage293 / 640 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
384-495 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:384:3.6e-29:495:112:1093 Response_reg#3
520-633 aa · 114 aa · 17.8% of protein
Raw token
Response_reg:520:7.98e-29:633:114:111- Raw architecture: HisKA:265:5.79e-18:331:67:64#HATPase_c:384:3.6e-29:495:112:109#Response_reg:520:7.98e-29:633:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000004.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span308005-311341Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_08260RefSeq proteinWP_117638862.1
Context group ID
GCF_003436075::NZ_QSOL01000004.1::G00053Context members
DXD81_RS18890DXD81_RS08260
Partner locus tags
DXD81_RS18890DXD81_RS08260
Partner old locus tags
DXD81_08260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117638862.1Primary protein accession used for annex mappings.
UniProt accessionA0A412KRC9Primary UniProt accession resolved in the annex database.
UniProt IDA0A412KRC9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS08260Primary locus identifier stored in the genes table.
Old locus tagDXD81_08260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000004.1Sequence record reported by the local genomic context database.
Genomic interval309 419-311 341 nt1 923 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span308 005-311 341 ntGCF_003436075::NZ_QSOL01000004.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000004.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span308 005-311 341 nt3 337 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 005 nt311 341 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS18890GCF_003436075#DXD81_RS18890
RRunclassified
308 005-308 970 nt · Forward (+)
DXD81_RS08260GCF_003436075#DXD81_RS08260
HKHybridCurrent focus
309 419-311 341 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS08260The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0921632
Simplified PFAM architecture for HKOC_0921632
PFAM domain coverage: 295 / 640 aa (46.1%)
1 aa640 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[265-330] | HATPase_c[381-494] | Response_reg[520-634]
- Domain count: 3
- Matched identifier: HKOC_0921632
- Positioned domains: HisKA 265-330 ; HATPase_c 381-494 ; Response_reg 520-634
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS08260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key