1 Response_reg#1
2-114 aa · 113 aa · 51.1% of protein
Raw token
Response_reg:2:1.78e-29:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS07230
Response regulator OmpR family
Blautia obeum · GCF_003436075
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436075#DXD81_RS07230Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 221 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.5% of protein
Raw token
Trans_reg_C:146:9.09e-31:219:77:77- Raw architecture: Response_reg:2:1.78e-29:114:113:111#Trans_reg_C:146:9.09e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436075::NZ_QSOL01000004.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span95464-96129Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_07230RefSeq proteinWP_117638784.1
Context group ID
GCF_003436075::NZ_QSOL01000004.1::G00048Context members
DXD81_RS07230
Partner locus tags
DXD81_RS07230
Partner old locus tags
DXD81_07230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117638784.1Primary protein accession used for annex mappings.
UniProt accessionA0A412ERE2Primary UniProt accession resolved in the annex database.
UniProt IDA0A412ERE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS07230Primary locus identifier stored in the genes table.
Old locus tagDXD81_07230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000004.1Sequence record reported by the local genomic context database.
Genomic interval95 464-96 129 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 464-96 129 ntGCF_003436075::NZ_QSOL01000004.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000004.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span95 464-96 129 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 464 nt96 129 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD81_RS07230GCF_003436075#DXD81_RS07230
RROmpRCurrent focus
95 464-96 129 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS07230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1687456
Simplified PFAM architecture for RROC_1687456
PFAM domain coverage: 185 / 221 aa (83.7%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[147-218]
- Domain count: 2
- Matched identifier: RROC_1687456
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 147-218 ; Trans_reg_C 147-218
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS07230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key