1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:4.87e-29:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS05245
Response regulator OmpR family
Blautia obeum · GCF_003436075
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS05245Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 221 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 33.9% of protein
Raw token
Trans_reg_C:144:1.72e-20:218:77:77- Raw architecture: Response_reg:4:4.87e-29:112:111:111#Trans_reg_C:144:1.72e-20:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000002.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span537506-539514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_05245RefSeq proteinWP_117638668.1
Context group ID
GCF_003436075::NZ_QSOL01000002.1::G00039Context members
DXD81_RS05240DXD81_RS05245
Partner locus tags
DXD81_RS05240DXD81_RS05245
Partner old locus tags
DXD81_05240DXD81_05245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117638668.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS05245Primary locus identifier stored in the genes table.
Old locus tagDXD81_05245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000002.1Sequence record reported by the local genomic context database.
Genomic interval538 849-539 514 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span537 506-539 514 ntGCF_003436075::NZ_QSOL01000002.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000002.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span537 506-539 514 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
537 506 nt539 514 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS05240GCF_003436075#DXD81_RS05240
HKClassic
537 506-538 864 nt · Reverse (-)
DXD81_RS05245GCF_003436075#DXD81_RS05245
RROmpRCurrent focus
538 849-539 514 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS05245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1687454
Simplified PFAM architecture for RROC_1687454
PFAM domain coverage: 181 / 221 aa (81.9%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1687454
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS05245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key