1 Response_reg#1
6-112 aa · 107 aa · 24.8% of protein
Raw token
Response_reg:6:9.38e-29:112:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS01440
Response regulator, unclassified
Blautia obeum · GCF_003436075
ClassRRTypeunclassifiedLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS01440Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 432 aa (24.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa432 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:9.38e-29:112:107:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328861-331555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_01440RefSeq proteinWP_117638394.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00011Context members
DXD81_RS01440DXD81_RS01450
Partner locus tags
DXD81_RS01440DXD81_RS01450
Partner old locus tags
DXD81_01440DXD81_01450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117638394.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS01440Primary locus identifier stored in the genes table.
Old locus tagDXD81_01440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval328 861-330 159 nt1 299 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span328 861-331 555 ntGCF_003436075::NZ_QSOL01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span328 861-331 555 nt2 695 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 861 nt331 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS01440GCF_003436075#DXD81_RS01440
RRunclassifiedCurrent focus
328 861-330 159 nt · Forward (+)
DXD81_RS01450GCF_003436075#DXD81_RS01450
HKClassic
330 512-331 555 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS10345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113210
Simplified PFAM architecture for RROC_0113210
PFAM domain coverage: 190 / 529 aa (35.9%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[449-526]
- Domain count: 2
- Matched identifier: RROC_0113210
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 449-526 ; HTH_18 449-526
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS10345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key