1 Response_reg#1
6-114 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:6:3.13e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS01325
Response regulator OmpR family
Blautia obeum · GCF_003436075
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436075#DXD81_RS01325Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.8% of protein
Raw token
Trans_reg_C:156:4.14e-30:233:78:77- Raw architecture: Response_reg:6:3.13e-40:114:111:111#Trans_reg_C:156:4.14e-30:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436075::NZ_QSOL01000001.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span303618-304334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_01325RefSeq proteinWP_055065928.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00010Context members
DXD81_RS01325
Partner locus tags
DXD81_RS01325
Partner old locus tags
DXD81_01325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065928.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BCZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BCZ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS01325Primary locus identifier stored in the genes table.
Old locus tagDXD81_01325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval303 618-304 334 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span303 618-304 334 ntGCF_003436075::NZ_QSOL01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span303 618-304 334 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
303 618 nt304 334 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD81_RS01325GCF_003436075#DXD81_RS01325
RROmpRCurrent focus
303 618-304 334 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS06220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936208
Simplified PFAM architecture for RROC_0936208
PFAM domain coverage: 186 / 238 aa (78.2%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0936208
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS06220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key