1 PAS_3#1
34-103 aa · 70 aa · 10.6% of protein
Raw token
PAS_3:34:0.00000957:103:72:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS00655
Histidine kinase, Hybrid
Blautia obeum · GCF_003436075
ClassHKTypeHybridLength661 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436075#DXD81_RS00655Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 661 aa (55.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 HisKA#2
285-351 aa · 67 aa · 10.1% of protein
Raw token
HisKA:285:0.0000000000000254:351:67:643 HATPase_c#3
398-512 aa · 115 aa · 17.4% of protein
Raw token
HATPase_c:398:3.74e-29:512:115:1094 Response_reg#4
539-654 aa · 116 aa · 17.5% of protein
Raw token
Response_reg:539:8.31e-33:654:116:111- Raw architecture: PAS_3:34:0.00000957:103:72:89#HisKA:285:0.0000000000000254:351:67:64#HATPase_c:398:3.74e-29:512:115:109#Response_reg:539:8.31e-33:654:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436075::NZ_QSOL01000001.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span155064-157049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_00655RefSeq proteinWP_117638336.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00007Context members
DXD81_RS00655
Partner locus tags
DXD81_RS00655
Partner old locus tags
DXD81_00655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117638336.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS00655Primary locus identifier stored in the genes table.
Old locus tagDXD81_00655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval155 064-157 049 nt1 986 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 064-157 049 ntGCF_003436075::NZ_QSOL01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span155 064-157 049 nt1 986 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 064 nt157 049 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD81_RS00655GCF_003436075#DXD81_RS00655
HKHybridCurrent focus
155 064-157 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS00655The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0870307
Simplified PFAM architecture for HKOC_0870307
PFAM domain coverage: 299 / 661 aa (45.2%)
1 aa661 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[285-351] | HATPase_c[398-513] | Response_reg[539-654]
- Domain count: 3
- Matched identifier: HKOC_0870307
- Positioned domains: HisKA 285-351 ; HATPase_c 398-513 ; Response_reg 539-654
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS00655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key