1 dCache_1#1
39-292 aa · 254 aa · 42.1% of protein
Raw token
dCache_1:39:0.00000000000347:292:256:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS00380
Histidine kinase, Classic
Blautia obeum · GCF_003436075
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS00380Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage511 / 604 aa (84.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation4 items
2 HAMP#2
307-378 aa · 72 aa · 11.9% of protein
Raw token
HAMP:307:0.000000000000332:378:72:693 His_kinase#3
394-471 aa · 78 aa · 12.9% of protein
Raw token
His_kinase:394:3.16e-33:471:79:804 HATPase_c#4
487-593 aa · 107 aa · 17.7% of protein
Raw token
HATPase_c:487:0.00000000000000182:593:109:109- Raw architecture: dCache_1:39:0.00000000000347:292:256:195#HAMP:307:0.000000000000332:378:72:69#His_kinase:394:3.16e-33:471:79:80#HATPase_c:487:0.00000000000000182:593:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87438-90839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_00380RefSeq proteinWP_117638310.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00004Context members
DXD81_RS00375DXD81_RS00380
Partner locus tags
DXD81_RS00375DXD81_RS00380
Partner old locus tags
DXD81_00375DXD81_00380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117638310.1Primary protein accession used for annex mappings.
UniProt accessionA0A415HSM5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415HSM5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS00380Primary locus identifier stored in the genes table.
Old locus tagDXD81_00380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval89 025-90 839 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 438-90 839 ntGCF_003436075::NZ_QSOL01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span87 438-90 839 nt3 402 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 438 nt90 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS00375GCF_003436075#DXD81_RS00375
RRunclassified
87 438-89 021 nt · Forward (+)
DXD81_RS00380GCF_003436075#DXD81_RS00380
HKClassicCurrent focus
89 025-90 839 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS00380The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033753
Simplified PFAM architecture for HKOC_1033753
PFAM domain coverage: 477 / 604 aa (79.0%)
1 aa604 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[47-290] | HAMP[330-377] | His_kinase[394-471] | HATPase_c[488-594]
- Domain count: 4
- Matched identifier: HKOC_1033753
- Positioned domains: dCache_1 47-290 ; HAMP 330-377 ; His_kinase 394-471 ; HATPase_c 488-594
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS00380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key