1 Response_reg#1
5-115 aa · 111 aa · 21.1% of protein
Raw token
Response_reg:5:1.64e-31:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD81_RS00375
Response regulator, unclassified
Blautia obeum · GCF_003436075
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436075#DXD81_RS00375Stable P2CS identifier used across views.
GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 527 aa (28.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
488-524 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:488:0.0000000994:524:37:42- Raw architecture: Response_reg:5:1.64e-31:115:111:111#HTH_AraC:488:0.0000000994:524:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436075::NZ_QSOL01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87438-90839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD81_00375RefSeq proteinWP_181975927.1
Context group ID
GCF_003436075::NZ_QSOL01000001.1::G00004Context members
DXD81_RS00375DXD81_RS00380
Partner locus tags
DXD81_RS00375DXD81_RS00380
Partner old locus tags
DXD81_00375DXD81_00380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181975927.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD81_RS00375Primary locus identifier stored in the genes table.
Old locus tagDXD81_00375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.
Genomic interval87 438-89 021 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 438-90 839 ntGCF_003436075::NZ_QSOL01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436075::NZ_QSOL01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span87 438-90 839 nt3 402 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 438 nt90 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD81_RS00375GCF_003436075#DXD81_RS00375
RRunclassifiedCurrent focus
87 438-89 021 nt · Forward (+)
DXD81_RS00380GCF_003436075#DXD81_RS00380
HKClassic
89 025-90 839 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS00375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116251
Simplified PFAM architecture for RROC_0116251
PFAM domain coverage: 313 / 527 aa (59.4%)
1 aa527 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[167-290] | HTH_18[448-525]
- Domain count: 3
- Matched identifier: RROC_0116251
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GGDEF_2 167-290 ; GGDEF_2 167-290 ; HTH_18 448-525 ; HTH_18 448-525
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS00375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075
AssemblyASM343607v1 · Scaffoldhaploid
Genome composition3 875 562 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key