Gene detail

DXD81_RS00015

Histidine kinase, Hybrid

Blautia obeum · GCF_003436075

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength942 aaTM0ValidatedNoCompleteYesContexttriad

Gene IDGCF_003436075#DXD81_RS00015Stable P2CS identifier used across views.

GenomeGCF_003436075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia

Selected clusterHKOC_0337981Run 6 · 11 sequences · id 100% · cov 80%

External referencesWP_055056222.1 · A0A174PS08 · MIST4 DXD81_RS00015RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

SBP_bac_3HisKAHATPase_cResponse_reg

Protein length942 aaLength used to scale native and Biotite-like views.

Annotated domains55 with usable coordinates.

Domain coverage704 / 942 aa (74.7%)Merged over positioned domains only.

Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa942 aa

Domain-by-domain annotation5 items

1 SBP_bac_3#1

52-253 aa · 202 aa · 21.4% of protein

Raw tokenSBP_bac_3:52:8.99e-31:253:212:224

2 SBP_bac_3#2

287-485 aa · 199 aa · 21.1% of protein

Raw tokenSBP_bac_3:287:0.000000000309:485:216:224

3 HisKA#3

566-631 aa · 66 aa · 7.0% of protein

Raw tokenHisKA:566:9.01e-20:631:66:64

4 HATPase_c#4

678-796 aa · 119 aa · 12.6% of protein

Raw tokenHATPase_c:678:1.85e-28:796:120:109

5 Response_reg#5

819-936 aa · 118 aa · 12.5% of protein

Raw tokenResponse_reg:819:2.29e-29:936:118:111

Raw architecture: SBP_bac_3:52:8.99e-31:253:212:224#SBP_bac_3:287:0.000000000309:485:216:224#HisKA:566:9.01e-20:631:66:64#HATPase_c:678:1.85e-28:796:120:109#Response_reg:819:2.29e-29:936:118:111
Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labeltriadGCF_003436075::NZ_QSOL01000001.1::G00001

Group size33 locus tags listed below.

HK / RR2 / 1Counts resolved for the local TCS neighborhood.

Context span327-7141Genomic interval covered by the local TCS group.

Identifiers

Old locus tagDXD81_00015RefSeq proteinWP_055056222.1

Context group IDGCF_003436075::NZ_QSOL01000001.1::G00001

Context members

DXD81_RS00010DXD81_RS00015DXD81_RS00020

Partner locus tags

DXD81_RS00010DXD81_RS00015DXD81_RS00020

Partner old locus tags

DXD81_00010DXD81_00015DXD81_00020

Partner protein IDs

WP_117638285.1 WP_055056222.1 WP_117638286.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_055056222.1Primary protein accession used for annex mappings.

UniProt accessionA0A174PS08Primary UniProt accession resolved in the annex database.

UniProt IDA0A174PS08_9FIRMDisplay identifier provided by UniProt.

GO / PubMed2 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0016020 GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDXD81_RS00015Primary locus identifier stored in the genes table.

Old locus tagDXD81_00015Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_QSOL01000001.1Sequence record reported by the local genomic context database.

Genomic interval2 753-5 581 nt2 829 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span327-7 141 ntGCF_003436075::NZ_QSOL01000001.1::G00001

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003436075::NZ_QSOL01000001.1::G00001

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labeltriadNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_QSOL01000001.1All displayed genes belong to this local TCS context.

Neighborhood span327-7 141 nt6 815 nt

Members31 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

327 nt7 141 nt

+-DXD81_RS00010 DXD81_RS00015 DXD81_RS00020

Neighborhood gene cards

3 genes in the current local neighborhood.

DXD81_RS00010GCF_003436075#DXD81_RS00010

HKHybrid

327-2 489 nt · Forward (+)

Old locus DXD81_00010RefSeq WP_117638285.1

Open gene

DXD81_RS00015GCF_003436075#DXD81_RS00015

HKHybridCurrent focus

2 753-5 581 nt · Forward (+)

Old locus DXD81_00015RefSeq WP_055056222.1

Open current gene

DXD81_RS00020GCF_003436075#DXD81_RS00020

RRRpfG

5 633-7 141 nt · Forward (+)

Old locus DXD81_00020RefSeq WP_117638286.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0337981HK

Run 611 sequencesid 100%cov 80%

PFAM SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg

Representative GCF_001405215#ARA06_RS09950

Selected clusterHKOC_0337981Run 6 · HK · 11 sequences

Representative sequenceGCF_001405215#ARA06_RS09950Use this link to inspect the representative gene detail.

PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_0337981

Simplified PFAM architecture for HKOC_0337981

PFAM domain coverage: 698 / 942 aa (74.1%)

1 aa942 aa

SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg

Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
Raw architecture: SBP_bac_3[49-241] | SBP_bac_3[282-485] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
Domain count: 5
Matched identifier: HKOC_0337981
Positioned domains: SBP_bac_3 49-241 ; SBP_bac_3 282-485 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936

Cluster members and taxonomy

Representative gene: GCF_001405215#ARA06_RS09950

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 40 520 · GCF_003436075

AssemblyASM343607v1 · Scaffoldhaploid

Genome composition3 875 562 bp · 41,5% GCBlautia obeum

Signal transduction countsGenes 115 · HK 61 · RR 53CheA 0 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key