1 HAMP#1
61-129 aa · 69 aa · 19.9% of protein
Raw token
HAMP:61:0.000000015:129:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS06675
Histidine kinase, Classic
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS06675Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 346 aa (68.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-196 aa · 64 aa · 18.5% of protein
Raw token
HisKA:133:0.000000000000014:196:64:643 HATPase_c#3
240-344 aa · 105 aa · 30.3% of protein
Raw token
HATPase_c:240:1.48e-21:344:109:109- Raw architecture: HAMP:61:0.000000015:129:70:69#HisKA:133:0.000000000000014:196:64:64#HATPase_c:240:1.48e-21:344:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000008.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62821-64973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_06675RefSeq proteinWP_181968315.1
Context group ID
GCF_003435125::NZ_QWGI01000008.1::G00035Context members
DW677_RS06670DW677_RS06675
Partner locus tags
DW677_RS06670DW677_RS06675
Partner old locus tags
DW677_06670DW677_06675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181968315.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS06675Primary locus identifier stored in the genes table.
Old locus tagDW677_06675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000008.1Sequence record reported by the local genomic context database.
Genomic interval63 933-64 973 nt1 041 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 821-64 973 ntGCF_003435125::NZ_QWGI01000008.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000008.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span62 821-64 973 nt2 153 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 821 nt64 973 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS06670GCF_003435125#DW677_RS06670
RROmpR
62 821-63 546 nt · Forward (+)
DW677_RS06675GCF_003435125#DW677_RS06675
HKClassicCurrent focus
63 933-64 973 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS06675The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2816300
Simplified PFAM architecture for HKOC_2816300
PFAM domain coverage: 167 / 346 aa (48.3%)
1 aa346 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-196] | HATPase_c[241-344]
- Domain count: 2
- Matched identifier: HKOC_2816300
- Positioned domains: HisKA 134-196 ; HATPase_c 241-344
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS06675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key