1 HisKA#1
125-193 aa · 69 aa · 19.4% of protein
Raw token
HisKA:125:0.0000000000000693:193:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS01255
Histidine kinase, Classic
Clostridium sp. AM25-23AC · GCF_003435125
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS01255Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 356 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-347 aa · 111 aa · 31.2% of protein
Raw token
HATPase_c:237:3.13e-23:347:111:109- Raw architecture: HisKA:125:0.0000000000000693:193:69:64#HATPase_c:237:3.13e-23:347:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8869-10636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_01255RefSeq proteinWP_117469347.1
Context group ID
GCF_003435125::NZ_QWGI01000002.1::G00018Context members
DW677_RS01255DW677_RS01260
Partner locus tags
DW677_RS01255DW677_RS01260
Partner old locus tags
DW677_01255DW677_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469347.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS01255Primary locus identifier stored in the genes table.
Old locus tagDW677_01255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000002.1Sequence record reported by the local genomic context database.
Genomic interval8 869-9 939 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 869-10 636 ntGCF_003435125::NZ_QWGI01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span8 869-10 636 nt1 768 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 869 nt10 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS01255GCF_003435125#DW677_RS01255
HKClassicCurrent focus
8 869-9 939 nt · Forward (+)
DW677_RS01260GCF_003435125#DW677_RS01260
RROmpR
9 929-10 636 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS01255The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2771421
Simplified PFAM architecture for HKOC_2771421
PFAM domain coverage: 283 / 356 aa (79.5%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[13-116] | HisKA[126-193] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2771421
- Positioned domains: DUF4118 13-116 ; HisKA 126-193 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS01255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key