1 Response_reg#1
4-109 aa · 106 aa · 23.5% of protein
Raw token
Response_reg:4:5.87e-28:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW677_RS05670
Response regulator NtrC family
Clostridium sp. AM25-23AC · GCF_003435125
ClassRRTypeNtrCLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435125#DW677_RS05670Stable P2CS identifier used across views.
GenomeGCF_003435125Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage264 / 451 aa (58.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation3 items
2 AAA_5#2
160-279 aa · 120 aa · 26.6% of protein
Raw token
AAA_5:160:0.000000585:279:134:1353 HTH_8#3
412-449 aa · 38 aa · 8.4% of protein
Raw token
HTH_8:412:0.0000000163:449:38:40- Raw architecture: Response_reg:4:5.87e-28:109:106:111#AAA_5:160:0.000000585:279:134:135#HTH_8:412:0.0000000163:449:38:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435125::NZ_QWGI01000006.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span134411-137084Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW677_05670RefSeq proteinWP_117504213.1
Context group ID
GCF_003435125::NZ_QWGI01000006.1::G00032Context members
DW677_RS05665DW677_RS05670
Partner locus tags
DW677_RS05665DW677_RS05670
Partner old locus tags
DW677_05665DW677_05670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117504213.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW677_RS05670Primary locus identifier stored in the genes table.
Old locus tagDW677_05670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGI01000006.1Sequence record reported by the local genomic context database.
Genomic interval135 729-137 084 nt1 356 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 411-137 084 ntGCF_003435125::NZ_QWGI01000006.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435125::NZ_QWGI01000006.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span134 411-137 084 nt2 674 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 411 nt137 084 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW677_RS05665GCF_003435125#DW677_RS05665
HKClassic
134 411-135 751 nt · Forward (+)
DW677_RS05670GCF_003435125#DW677_RS05670
RRNtrCCurrent focus
135 729-137 084 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS05670The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0283550
Simplified PFAM architecture for RROC_0283550
PFAM domain coverage: 379 / 451 aa (84.0%)
1 aa451 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[4-110] | Sigma54_activat[137-303] | AAA_lid_14[309-375] | HTH_8[412-449]
- Domain count: 4
- Matched identifier: RROC_0283550
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Sigma54_activat 137-303 ; Sigma54_activat 137-303 ; AAA_lid_14 309-375 ; AAA_lid_14 309-375 ; HTH_8 412-449 ; HTH_8 412-449
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS05670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 240 · GCF_003435125
AssemblyASM343512v1 · Scaffoldhaploid
Genome composition3 757 782 bp · 48,0% GCClostridium sp. AM25-23AC
Signal transduction countsGenes 66 · HK 30 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key