1 HisKA#1
118-179 aa · 62 aa · 18.7% of protein
Raw token
HisKA:118:0.000000000000103:179:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS08095
Histidine kinase, Classic
Absiella sp. AM22-9 · GCF_003433695
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS08095Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 331 aa (50.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
224-329 aa · 106 aa · 32.0% of protein
Raw token
HATPase_c:224:9.04e-24:329:106:109- Raw architecture: HisKA:118:0.000000000000103:179:62:64#HATPase_c:224:9.04e-24:329:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000004.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168323-169994Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_08095RefSeq proteinWP_117452359.1
Context group ID
GCF_003433695::NZ_QVFG01000004.1::G00047Context members
DW271_RS08095DW271_RS08100
Partner locus tags
DW271_RS08095DW271_RS08100
Partner old locus tags
DW271_08095DW271_08100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452359.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R651Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R651_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS08095Primary locus identifier stored in the genes table.
Old locus tagDW271_08095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000004.1Sequence record reported by the local genomic context database.
Genomic interval168 323-169 318 nt996 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 323-169 994 ntGCF_003433695::NZ_QVFG01000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span168 323-169 994 nt1 672 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 323 nt169 994 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS08095GCF_003433695#DW271_RS08095
HKClassicCurrent focus
168 323-169 318 nt · Reverse (-)
DW271_RS08100GCF_003433695#DW271_RS08100
RROmpR
169 308-169 994 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS08095The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2855577
Simplified PFAM architecture for HKOC_2855577
PFAM domain coverage: 166 / 331 aa (50.2%)
1 aa331 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[118-178] | HATPase_c[225-329]
- Domain count: 2
- Matched identifier: HKOC_2855577
- Positioned domains: HisKA 118-178 ; HATPase_c 225-329
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS08095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key