1 Response_reg#1
3-98 aa · 96 aa · 41.7% of protein
Raw token
Response_reg:3:0.0000331:98:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS00400
Response regulator LytTR family
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433695#DW271_RS00400Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 230 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
127-221 aa · 95 aa · 41.3% of protein
Raw token
LytTR:127:0.000000000602:221:99:98- Raw architecture: Response_reg:3:0.0000331:98:105:111#LytTR:127:0.000000000602:221:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433695::NZ_QVFG01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81679-82371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_00400RefSeq proteinWP_158552248.1
Context group ID
GCF_003433695::NZ_QVFG01000001.1::G00004Context members
DW271_RS00400
Partner locus tags
DW271_RS00400
Partner old locus tags
DW271_00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158552248.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RAP3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RAP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS00400Primary locus identifier stored in the genes table.
Old locus tagDW271_00400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000001.1Sequence record reported by the local genomic context database.
Genomic interval81 679-82 371 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 679-82 371 ntGCF_003433695::NZ_QVFG01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span81 679-82 371 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 679 nt82 371 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW271_RS00400GCF_003433695#DW271_RS00400
RRLytTRCurrent focus
81 679-82 371 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS00400The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1211230
Simplified PFAM architecture for RROC_1211230
PFAM domain coverage: 90 / 230 aa (39.1%)
1 aa230 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[132-221]
- Domain count: 1
- Matched identifier: RROC_1211230
- Positioned domains: LytTR 132-221 ; LytTR 132-221
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS00400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key