1 Response_reg#1
4-118 aa · 115 aa · 21.9% of protein
Raw token
Response_reg:4:6.92e-27:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS00620
Response regulator, unclassified
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeunclassifiedLength526 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS00620Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length526 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 526 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
427-461 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:427:0.000000000605:461:35:423 HTH_AraC#3
486-518 aa · 33 aa · 6.3% of protein
Raw token
HTH_AraC:486:0.000000000588:518:33:42- Raw architecture: Response_reg:4:6.92e-27:118:115:111#HTH_AraC:427:0.000000000605:461:35:42#HTH_AraC:486:0.000000000588:518:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119871-123108Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_00620RefSeq proteinWP_117453960.1
Context group ID
GCF_003433695::NZ_QVFG01000001.1::G00006Context members
DW271_RS00615DW271_RS00620
Partner locus tags
DW271_RS00615DW271_RS00620
Partner old locus tags
DW271_00615DW271_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453960.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RAJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RAJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS00620Primary locus identifier stored in the genes table.
Old locus tagDW271_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000001.1Sequence record reported by the local genomic context database.
Genomic interval121 528-123 108 nt1 581 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 871-123 108 ntGCF_003433695::NZ_QVFG01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span119 871-123 108 nt3 238 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 871 nt123 108 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS00615GCF_003433695#DW271_RS00615
HKClassic
119 871-121 508 nt · Forward (+)
DW271_RS00620GCF_003433695#DW271_RS00620
RRunclassifiedCurrent focus
121 528-123 108 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS00620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0117838
Simplified PFAM architecture for RROC_0117838
PFAM domain coverage: 184 / 526 aa (35.0%)
1 aa526 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[428-461] | HTH_AraC[482-518]
- Domain count: 3
- Matched identifier: RROC_0117838
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_AraC 428-461 ; HTH_AraC 428-461 ; HTH_AraC 482-518 ; HTH_AraC 482-518
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS00620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key