1 HisKA#1
471-537 aa · 67 aa · 6.8% of protein
Raw token
HisKA:471:2.51e-18:537:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS09855
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeHybridLength982 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS09855Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length982 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 982 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa982 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
585-701 aa · 117 aa · 11.9% of protein
Raw token
HATPase_c:585:5.69e-32:701:117:1093 Response_reg#3
721-834 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:721:3.08e-21:834:114:1114 Response_reg#4
862-978 aa · 117 aa · 11.9% of protein
Raw token
Response_reg:862:1.61e-32:978:117:111- Raw architecture: HisKA:471:2.51e-18:537:67:64#HATPase_c:585:5.69e-32:701:117:109#Response_reg:721:3.08e-21:834:114:111#Response_reg:862:1.61e-32:978:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000009.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span52662-55610Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_09840RefSeq proteinWP_112091269.1
Context group ID
GCF_003287405::NZ_PRLD01000009.1::G00033Context members
C4N24_RS09855
Partner locus tags
C4N24_RS09855
Partner old locus tags
C4N24_09840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112091269.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U2E3Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U2E3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS09855Primary locus identifier stored in the genes table.
Old locus tagC4N24_09840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000009.1Sequence record reported by the local genomic context database.
Genomic interval52 662-55 610 nt2 949 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 662-55 610 ntGCF_003287405::NZ_PRLD01000009.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000009.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000009.1All displayed genes belong to this local TCS context.
Neighborhood span52 662-55 610 nt2 949 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 662 nt55 610 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS09855GCF_003287405#C4N24_RS09855
HKHybridCurrent focus
52 662-55 610 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS09855The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0305023
Simplified PFAM architecture for HKOC_0305023
PFAM domain coverage: 414 / 982 aa (42.2%)
1 aa982 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[471-537] | HATPase_c[585-701] | Response_reg[721-833] | Response_reg[862-978]
- Domain count: 4
- Matched identifier: HKOC_0305023
- Positioned domains: HisKA 471-537 ; HATPase_c 585-701 ; Response_reg 721-833 ; Response_reg 862-978
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS09855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key