1 Response_reg#1
3-105 aa · 103 aa · 42.9% of protein
Raw token
Response_reg:3:0.00000000000785:105:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS00325
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003287405#C4N24_RS00325Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 240 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-230 aa · 90 aa · 37.5% of protein
Raw token
LytTR:141:0.000000000000039:230:95:98- Raw architecture: Response_reg:3:0.00000000000785:105:106:111#LytTR:141:0.000000000000039:230:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003287405::NZ_PRLD01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75186-75908Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_00325RefSeq proteinWP_112089833.1
Context group ID
GCF_003287405::NZ_PRLD01000001.1::G00006Context members
C4N24_RS00325
Partner locus tags
C4N24_RS00325
Partner old locus tags
C4N24_00325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112089833.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UD42Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UD42_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS00325Primary locus identifier stored in the genes table.
Old locus tagC4N24_00325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000001.1Sequence record reported by the local genomic context database.
Genomic interval75 186-75 908 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 186-75 908 ntGCF_003287405::NZ_PRLD01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span75 186-75 908 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 186 nt75 908 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4N24_RS00325GCF_003287405#C4N24_RS00325
RRLytTRCurrent focus
75 186-75 908 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS00325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888023
Simplified PFAM architecture for RROC_0888023
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[17-106] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0888023
- Positioned domains: Response_reg 17-106 ; Response_reg 17-106 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key