1 sCache_like#1
72-130 aa · 59 aa · 13.1% of protein
Raw token
sCache_like:72:0.00000579:130:59:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS01400
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003287405
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS01400Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 449 aa (52.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
223-288 aa · 66 aa · 14.7% of protein
Raw token
HisKA:223:1.47e-19:288:66:643 HATPase_c#3
336-446 aa · 111 aa · 24.7% of protein
Raw token
HATPase_c:336:1.63e-29:446:111:109- Raw architecture: sCache_like:72:0.00000579:130:59:114#HisKA:223:1.47e-19:288:66:64#HATPase_c:336:1.63e-29:446:111:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span263750-265782Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_01395RefSeq proteinWP_112090012.1
Context group ID
GCF_003287405::NZ_PRLD01000001.1::G00007Context members
C4N24_RS01395C4N24_RS01400
Partner locus tags
C4N24_RS01395C4N24_RS01400
Partner old locus tags
C4N24_01390C4N24_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112090012.1Primary protein accession used for annex mappings.
UniProt accessionA0A329UEW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A329UEW9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS01400Primary locus identifier stored in the genes table.
Old locus tagC4N24_01395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000001.1Sequence record reported by the local genomic context database.
Genomic interval264 433-265 782 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span263 750-265 782 ntGCF_003287405::NZ_PRLD01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span263 750-265 782 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 750 nt265 782 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS01395GCF_003287405#C4N24_RS01395
RROmpR
263 750-264 436 nt · Forward (+)
C4N24_RS01400GCF_003287405#C4N24_RS01400
HKClassicCurrent focus
264 433-265 782 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS01400The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1976980
Simplified PFAM architecture for HKOC_1976980
PFAM domain coverage: 175 / 449 aa (39.0%)
1 aa449 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-288] | HATPase_c[339-447]
- Domain count: 2
- Matched identifier: HKOC_1976980
- Positioned domains: HisKA 223-288 ; HATPase_c 339-447
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS01400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key