1 Response_reg#1
10-119 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:10:1.03e-25:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS09605
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS09605Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:1.14e-29:233:77:77- Raw architecture: Response_reg:10:1.03e-25:119:111:111#Trans_reg_C:157:1.14e-29:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000009.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5459-7539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_09590RefSeq proteinWP_112091230.1
Context group ID
GCF_003287405::NZ_PRLD01000009.1::G00031Context members
C4N24_RS09605C4N24_RS09610
Partner locus tags
C4N24_RS09605C4N24_RS09610
Partner old locus tags
C4N24_09590C4N24_09595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_112091230.1Primary protein accession used for annex mappings.
UniProt accessionA0A329U6G2Primary UniProt accession resolved in the annex database.
UniProt IDA0A329U6G2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS09605Primary locus identifier stored in the genes table.
Old locus tagC4N24_09590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000009.1Sequence record reported by the local genomic context database.
Genomic interval5 459-6 178 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 459-7 539 ntGCF_003287405::NZ_PRLD01000009.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000009.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000009.1All displayed genes belong to this local TCS context.
Neighborhood span5 459-7 539 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 459 nt7 539 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS09605GCF_003287405#C4N24_RS09605
RROmpRCurrent focus
5 459-6 178 nt · Forward (+)
C4N24_RS09610GCF_003287405#C4N24_RS09610
HKClassic
6 175-7 539 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287405#C4N24_RS09605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0912689
Simplified PFAM architecture for RROC_0912689
PFAM domain coverage: 186 / 239 aa (77.8%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-118] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_0912689
- Positioned domains: Response_reg 10-118 ; Response_reg 10-118 ; Trans_reg_C 157-233 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_003287405#C4N24_RS09605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key