1 Response_reg#1
5-113 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:5:4.38e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4N24_RS08040
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003287405
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003287405#C4N24_RS08040Stable P2CS identifier used across views.
GenomeGCF_003287405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 222 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-220 aa · 77 aa · 34.7% of protein
Raw token
Trans_reg_C:144:3.27e-29:220:77:77- Raw architecture: Response_reg:5:4.38e-31:113:110:111#Trans_reg_C:144:3.27e-29:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003287405::NZ_PRLD01000007.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4308-5985Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4N24_08030RefSeq proteinWP_055145332.1
Context group ID
GCF_003287405::NZ_PRLD01000007.1::G00029Context members
C4N24_RS08035C4N24_RS08040
Partner locus tags
C4N24_RS08035C4N24_RS08040
Partner old locus tags
C4N24_08025C4N24_08030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055145332.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3E4P4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3E4P4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4N24_RS08040Primary locus identifier stored in the genes table.
Old locus tagC4N24_08030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PRLD01000007.1Sequence record reported by the local genomic context database.
Genomic interval5 317-5 985 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 308-5 985 ntGCF_003287405::NZ_PRLD01000007.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003287405::NZ_PRLD01000007.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PRLD01000007.1All displayed genes belong to this local TCS context.
Neighborhood span4 308-5 985 nt1 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 308 nt5 985 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4N24_RS08035GCF_003287405#C4N24_RS08035
HKClassic
4 308-5 315 nt · Reverse (-)
C4N24_RS08040GCF_003287405#C4N24_RS08040
RROmpRCurrent focus
5 317-5 985 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404315#ARB66_RS05745Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641658
Simplified PFAM architecture for RROC_1641658
PFAM domain coverage: 186 / 222 aa (83.8%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[144-220]
- Domain count: 2
- Matched identifier: RROC_1641658
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 144-220 ; Trans_reg_C 144-220
Cluster members and taxonomy
Representative gene: GCF_001404315#ARB66_RS05745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003287405
AssemblyASM328740v1 · Contighaploid
Genome composition3 032 382 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 58 · HK 26 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key