1 Response_reg#1
5-113 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:5:4.38e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB66_RS05745
Response regulator OmpR family
Coprococcus eutactus · GCF_001404315
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404315#ARB66_RS05745Stable P2CS identifier used across views.
GenomeGCF_001404315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 222 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-220 aa · 77 aa · 34.7% of protein
Raw token
Trans_reg_C:144:3.27e-29:220:77:77- Raw architecture: Response_reg:5:4.38e-31:113:110:111#Trans_reg_C:144:3.27e-29:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404315::NZ_CYYZ01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span197305-198982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852386_01167RefSeq proteinWP_055145332.1
Context group ID
GCF_001404315::NZ_CYYZ01000002.1::G00019Context members
ARB66_RS05745ARB66_RS05750
Partner locus tags
ARB66_RS05745ARB66_RS05750
Partner old locus tags
ERS852386_01167ERS852386_01168
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055145332.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3E4P4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3E4P4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB66_RS05745Primary locus identifier stored in the genes table.
Old locus tagERS852386_01167Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval197 305-197 973 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span197 305-198 982 ntGCF_001404315::NZ_CYYZ01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404315::NZ_CYYZ01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span197 305-198 982 nt1 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 305 nt198 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB66_RS05745GCF_001404315#ARB66_RS05745
RROmpRCurrent focus
197 305-197 973 nt · Forward (+)
ARB66_RS05750GCF_001404315#ARB66_RS05750
HKClassic
197 975-198 982 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404315#ARB66_RS05745The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641658
Simplified PFAM architecture for RROC_1641658
PFAM domain coverage: 186 / 222 aa (83.8%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[144-220]
- Domain count: 2
- Matched identifier: RROC_1641658
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 144-220 ; Trans_reg_C 144-220
Cluster members and taxonomy
Representative gene: GCF_001404315#ARB66_RS05745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001404315
Assembly13414_6#13 · Scaffoldhaploid
Genome composition3 175 111 bp · 44,0% GCCoprococcus eutactus
Signal transduction countsGenes 82 · HK 42 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key