1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:1.12e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS07540
Response regulator OmpR family
Agathobacter rectalis · GCF_003122495
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS07540Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:147:8.57e-30:221:75:77- Raw architecture: Response_reg:4:1.12e-28:113:111:111#Trans_reg_C:147:8.57e-30:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122926-124856Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_07625RefSeq proteinWP_109257799.1
Context group ID
GCF_003122495::NZ_JRFS01000014.1::G00011Context members
LD38_RS07540LD38_RS07545
Partner locus tags
LD38_RS07540LD38_RS07545
Partner old locus tags
LD38_07625LD38_07630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109257799.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2EHV7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2EHV7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS07540Primary locus identifier stored in the genes table.
Old locus tagLD38_07625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000014.1Sequence record reported by the local genomic context database.
Genomic interval122 926-123 615 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 926-124 856 ntGCF_003122495::NZ_JRFS01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000014.1All displayed genes belong to this local TCS context.
Neighborhood span122 926-124 856 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 926 nt124 856 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS07540GCF_003122495#LD38_RS07540
RROmpRCurrent focus
122 926-123 615 nt · Forward (+)
LD38_RS07545GCF_003122495#LD38_RS07545
HKClassic
123 591-124 856 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS07540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1259968
Simplified PFAM architecture for RROC_1259968
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1259968
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS07540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key