1 HisKA#1
221-287 aa · 67 aa · 14.9% of protein
Raw token
HisKA:221:0.000000000000688:287:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS00585
Histidine kinase, Classic
Agathobacter rectalis · GCF_003122495
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS00585Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 450 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
335-446 aa · 112 aa · 24.9% of protein
Raw token
HATPase_c:335:8.9e-29:446:112:109- Raw architecture: HisKA:221:0.000000000000688:287:67:64#HATPase_c:335:8.9e-29:446:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105549-107682Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_00605RefSeq proteinWP_306742453.1
Context group ID
GCF_003122495::NZ_JRFS01000001.1::G00001Context members
LD38_RS00580LD38_RS00585
Partner locus tags
LD38_RS00580LD38_RS00585
Partner old locus tags
LD38_00600LD38_00605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306742453.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS00585Primary locus identifier stored in the genes table.
Old locus tagLD38_00605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000001.1Sequence record reported by the local genomic context database.
Genomic interval106 330-107 682 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 549-107 682 ntGCF_003122495::NZ_JRFS01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span105 549-107 682 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 549 nt107 682 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS00580GCF_003122495#LD38_RS00580
RROmpR
105 549-106 241 nt · Forward (+)
LD38_RS00585GCF_003122495#LD38_RS00585
HKClassicCurrent focus
106 330-107 682 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS00585The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1964595
Simplified PFAM architecture for HKOC_1964595
PFAM domain coverage: 179 / 450 aa (39.8%)
1 aa450 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[221-287] | HATPase_c[335-446]
- Domain count: 2
- Matched identifier: HKOC_1964595
- Positioned domains: HisKA 221-287 ; HATPase_c 335-446
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS00585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key