1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.0000000000992:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS02595
Histidine kinase, Classic
Agathobacter rectalis · GCF_003122495
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS02595Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 385 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.000000000528:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.3% of protein
Raw token
HATPase_c:272:6.58e-32:380:109:109- Raw architecture: HAMP:89:0.0000000000992:159:71:69#HisKA:164:0.000000000528:230:67:64#HATPase_c:272:6.58e-32:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span340633-342467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_02645RefSeq proteinWP_109257229.1
Context group ID
GCF_003122495::NZ_JRFS01000002.1::G00024Context members
LD38_RS02595LD38_RS02600
Partner locus tags
LD38_RS02595LD38_RS02600
Partner old locus tags
LD38_02645LD38_02650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109257229.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2EKZ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2EKZ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS02595Primary locus identifier stored in the genes table.
Old locus tagLD38_02645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000002.1Sequence record reported by the local genomic context database.
Genomic interval340 633-341 790 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span340 633-342 467 ntGCF_003122495::NZ_JRFS01000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000002.1All displayed genes belong to this local TCS context.
Neighborhood span340 633-342 467 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
340 633 nt342 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS02595GCF_003122495#LD38_RS02595
HKClassicCurrent focus
340 633-341 790 nt · Reverse (-)
LD38_RS02600GCF_003122495#LD38_RS02600
RROmpR
341 787-342 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS02595The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2566484
Simplified PFAM architecture for HKOC_2566484
PFAM domain coverage: 226 / 385 aa (58.7%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-229] | HATPase_c[275-381]
- Domain count: 3
- Matched identifier: HKOC_2566484
- Positioned domains: HAMP 106-158 ; HisKA 164-229 ; HATPase_c 275-381
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS02595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key