1 Response_reg#1
35-144 aa · 110 aa · 42.8% of protein
Raw token
Response_reg:35:1e-37:144:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS02600
Response regulator OmpR family
Agathobacter rectalis · GCF_003122495
ClassRRTypeOmpRLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS02600Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 257 aa (72.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
176-251 aa · 76 aa · 29.6% of protein
Raw token
Trans_reg_C:176:1.42e-22:251:78:77- Raw architecture: Response_reg:35:1e-37:144:110:111#Trans_reg_C:176:1.42e-22:251:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span340633-342467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_02650RefSeq proteinWP_306742661.1
Context group ID
GCF_003122495::NZ_JRFS01000002.1::G00024Context members
LD38_RS02595LD38_RS02600
Partner locus tags
LD38_RS02595LD38_RS02600
Partner old locus tags
LD38_02645LD38_02650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306742661.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS02600Primary locus identifier stored in the genes table.
Old locus tagLD38_02650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000002.1Sequence record reported by the local genomic context database.
Genomic interval341 787-342 467 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span340 633-342 467 ntGCF_003122495::NZ_JRFS01000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000002.1All displayed genes belong to this local TCS context.
Neighborhood span340 633-342 467 nt1 835 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
340 633 nt342 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS02595GCF_003122495#LD38_RS02595
HKClassic
340 633-341 790 nt · Reverse (-)
LD38_RS02600GCF_003122495#LD38_RS02600
RROmpRCurrent focus
341 787-342 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS02600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0668315
Simplified PFAM architecture for RROC_0668315
PFAM domain coverage: 185 / 257 aa (72.0%)
1 aa257 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[35-144] | Trans_reg_C[176-250]
- Domain count: 2
- Matched identifier: RROC_0668315
- Positioned domains: Response_reg 35-144 ; Response_reg 35-144 ; Trans_reg_C 176-250 ; Trans_reg_C 176-250
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS02600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key