1 HAMP#1
75-139 aa · 65 aa · 18.1% of protein
Raw token
HAMP:75:0.000000412:139:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS05810
Histidine kinase, Classic
Agathobacter rectalis · GCF_003122495
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003122495#LD38_RS05810Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 360 aa (60.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-213 aa · 62 aa · 17.2% of protein
Raw token
HisKA:152:0.0000000128:213:63:643 HATPase_c#3
263-352 aa · 90 aa · 25.0% of protein
Raw token
HATPase_c:263:3.83e-16:352:92:109- Raw architecture: HAMP:75:0.000000412:139:66:69#HisKA:152:0.0000000128:213:63:64#HATPase_c:263:3.83e-16:352:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003122495::NZ_JRFS01000011.1::G00006
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span26406-29106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_05875RefSeq proteinWP_004611622.1
Context group ID
GCF_003122495::NZ_JRFS01000011.1::G00006Context members
LD38_RS05800LD38_RS05805LD38_RS05810
Partner locus tags
LD38_RS05800LD38_RS05805LD38_RS05810
Partner old locus tags
LD38_05865LD38_05870LD38_05875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004611622.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C611Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C611_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS05810Primary locus identifier stored in the genes table.
Old locus tagLD38_05875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000011.1Sequence record reported by the local genomic context database.
Genomic interval28 024-29 106 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 406-29 106 ntGCF_003122495::NZ_JRFS01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000011.1All displayed genes belong to this local TCS context.
Neighborhood span26 406-29 106 nt2 701 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 406 nt29 106 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
LD38_RS05800GCF_003122495#LD38_RS05800
RRFrzZ
26 406-27 176 nt · Forward (+)
LD38_RS05805GCF_003122495#LD38_RS05805
RROmpR
27 341-28 018 nt · Forward (+)
LD38_RS05810GCF_003122495#LD38_RS05810
HKClassicCurrent focus
28 024-29 106 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244495#BN1969_RS17165Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2712593
Simplified PFAM architecture for HKOC_2712593
PFAM domain coverage: 199 / 366 aa (54.4%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[101-146] | HisKA[159-219] | HATPase_c[268-359]
- Domain count: 3
- Matched identifier: HKOC_2712593
- Positioned domains: HAMP 101-146 ; HisKA 159-219 ; HATPase_c 268-359
Cluster members and taxonomy
Representative gene: GCF_001244495#BN1969_RS17165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key