1 Response_reg#1
8-114 aa · 107 aa · 47.6% of protein
Raw token
Response_reg:8:2.53e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS05805
Response regulator OmpR family
Agathobacter rectalis · GCF_003122495
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003122495#LD38_RS05805Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 225 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-223 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:151:4.87e-24:223:74:77- Raw architecture: Response_reg:8:2.53e-35:114:110:111#Trans_reg_C:151:4.87e-24:223:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003122495::NZ_JRFS01000011.1::G00006
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span26406-29106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_05870RefSeq proteinWP_004611621.1
Context group ID
GCF_003122495::NZ_JRFS01000011.1::G00006Context members
LD38_RS05800LD38_RS05805LD38_RS05810
Partner locus tags
LD38_RS05800LD38_RS05805LD38_RS05810
Partner old locus tags
LD38_05865LD38_05870LD38_05875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004611621.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C638Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C638_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS05805Primary locus identifier stored in the genes table.
Old locus tagLD38_05870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000011.1Sequence record reported by the local genomic context database.
Genomic interval27 341-28 018 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 406-29 106 ntGCF_003122495::NZ_JRFS01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000011.1All displayed genes belong to this local TCS context.
Neighborhood span26 406-29 106 nt2 701 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 406 nt29 106 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
LD38_RS05800GCF_003122495#LD38_RS05800
RRFrzZ
26 406-27 176 nt · Forward (+)
LD38_RS05805GCF_003122495#LD38_RS05805
RROmpRCurrent focus
27 341-28 018 nt · Forward (+)
LD38_RS05810GCF_003122495#LD38_RS05810
HKClassic
28 024-29 106 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS05880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1474493
Simplified PFAM architecture for RROC_1474493
PFAM domain coverage: 179 / 225 aa (79.6%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-113] | Trans_reg_C[150-222]
- Domain count: 2
- Matched identifier: RROC_1474493
- Positioned domains: Response_reg 8-113 ; Response_reg 8-113 ; Trans_reg_C 150-222 ; Trans_reg_C 150-222
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS05880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key