1 Response_reg#1
5-114 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:5:9.98e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS05730
Response regulator OmpR family
Agathobacter rectalis · GCF_003122495
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003122495#LD38_RS05730Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 222 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:147:3.89e-23:220:75:77- Raw architecture: Response_reg:5:9.98e-28:114:111:111#Trans_reg_C:147:3.89e-23:220:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003122495::NZ_JRFS01000011.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14146-14814Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_05795RefSeq proteinWP_077326093.1
Context group ID
GCF_003122495::NZ_JRFS01000011.1::G00004Context members
LD38_RS05730
Partner locus tags
LD38_RS05730
Partner old locus tags
LD38_05795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077326093.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V1JNH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V1JNH4_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS05730Primary locus identifier stored in the genes table.
Old locus tagLD38_05795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000011.1Sequence record reported by the local genomic context database.
Genomic interval14 146-14 814 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 146-14 814 ntGCF_003122495::NZ_JRFS01000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000011.1All displayed genes belong to this local TCS context.
Neighborhood span14 146-14 814 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 146 nt14 814 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LD38_RS05730GCF_003122495#LD38_RS05730
RROmpRCurrent focus
14 146-14 814 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS05955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1643807
Simplified PFAM architecture for RROC_1643807
PFAM domain coverage: 184 / 222 aa (82.9%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1643807
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS05955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key