1 dCache_1#1
82-277 aa · 196 aa · 32.8% of protein
Raw token
dCache_1:82:0.0000000000141:277:204:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS05170
Histidine kinase, Classic
Agathobacter rectalis · GCF_003122495
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS05170Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage383 / 597 aa (64.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation3 items
2 His_kinase#2
379-458 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:379:2.35e-34:458:80:803 HATPase_c#3
473-579 aa · 107 aa · 17.9% of protein
Raw token
HATPase_c:473:1.13e-16:579:110:109- Raw architecture: dCache_1:82:0.0000000000141:277:204:195#His_kinase:379:2.35e-34:458:80:80#HATPase_c:473:1.13e-16:579:110:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000009.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129561-132939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_05240RefSeq proteinWP_109257539.1
Context group ID
GCF_003122495::NZ_JRFS01000009.1::G00053Context members
LD38_RS05165LD38_RS05170
Partner locus tags
LD38_RS05165LD38_RS05170
Partner old locus tags
LD38_05235LD38_05240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109257539.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2EIJ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2EIJ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS05170Primary locus identifier stored in the genes table.
Old locus tagLD38_05240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000009.1Sequence record reported by the local genomic context database.
Genomic interval131 146-132 939 nt1 794 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 561-132 939 ntGCF_003122495::NZ_JRFS01000009.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000009.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000009.1All displayed genes belong to this local TCS context.
Neighborhood span129 561-132 939 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 561 nt132 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS05165GCF_003122495#LD38_RS05165
RRunclassified
129 561-131 165 nt · Forward (+)
LD38_RS05170GCF_003122495#LD38_RS05170
HKClassicCurrent focus
131 146-132 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS05170The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1069709
Simplified PFAM architecture for HKOC_1069709
PFAM domain coverage: 421 / 597 aa (70.5%)
1 aa597 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[41-277] | His_kinase[380-458] | HATPase_c[475-579]
- Domain count: 3
- Matched identifier: HKOC_1069709
- Positioned domains: dCache_1 41-277 ; His_kinase 380-458 ; HATPase_c 475-579
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS05170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key