1 Response_reg#1
5-114 aa · 110 aa · 20.6% of protein
Raw token
Response_reg:5:2.33e-26:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS05165
Response regulator, unclassified
Agathobacter rectalis · GCF_003122495
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS05165Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage172 / 534 aa (32.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-477 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:446:0.000000232:477:32:423 HTH_AraC#3
498-527 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:498:0.0000000246:527:30:42- Raw architecture: Response_reg:5:2.33e-26:114:110:111#HTH_AraC:446:0.000000232:477:32:42#HTH_AraC:498:0.0000000246:527:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000009.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129561-132939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_05235RefSeq proteinWP_109257538.1
Context group ID
GCF_003122495::NZ_JRFS01000009.1::G00053Context members
LD38_RS05165LD38_RS05170
Partner locus tags
LD38_RS05165LD38_RS05170
Partner old locus tags
LD38_05235LD38_05240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109257538.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2EII6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2EII6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS05165Primary locus identifier stored in the genes table.
Old locus tagLD38_05235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000009.1Sequence record reported by the local genomic context database.
Genomic interval129 561-131 165 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 561-132 939 ntGCF_003122495::NZ_JRFS01000009.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000009.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000009.1All displayed genes belong to this local TCS context.
Neighborhood span129 561-132 939 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 561 nt132 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS05165GCF_003122495#LD38_RS05165
RRunclassifiedCurrent focus
129 561-131 165 nt · Forward (+)
LD38_RS05170GCF_003122495#LD38_RS05170
HKClassic
131 146-132 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS05165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103536
Simplified PFAM architecture for RROC_0103536
PFAM domain coverage: 321 / 534 aa (60.1%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[158-289] | HTH_18[450-527]
- Domain count: 3
- Matched identifier: RROC_0103536
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GGDEF_2 158-289 ; GGDEF_2 158-289 ; HTH_18 450-527 ; HTH_18 450-527
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS05165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key