1 HisKA#1
194-260 aa · 67 aa · 16.8% of protein
Raw token
HisKA:194:0.000000000000142:260:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS04580
Histidine kinase, Classic
Agathobacter rectalis · GCF_003122495
ClassHKTypeClassicLength399 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS04580Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length399 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 399 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa399 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-397 aa · 86 aa · 21.6% of protein
Raw token
HATPase_c:312:0.0000752:397:105:109- Raw architecture: HisKA:194:0.000000000000142:260:67:64#HATPase_c:312:0.0000752:397:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000009.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16465-18349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_04655RefSeq proteinWP_158272422.1
Context group ID
GCF_003122495::NZ_JRFS01000009.1::G00051Context members
LD38_RS04575LD38_RS04580
Partner locus tags
LD38_RS04575LD38_RS04580
Partner old locus tags
LD38_04650LD38_04655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158272422.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2EIF0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2EIF0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS04580Primary locus identifier stored in the genes table.
Old locus tagLD38_04655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000009.1Sequence record reported by the local genomic context database.
Genomic interval17 150-18 349 nt1 200 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 465-18 349 ntGCF_003122495::NZ_JRFS01000009.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000009.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000009.1All displayed genes belong to this local TCS context.
Neighborhood span16 465-18 349 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 465 nt18 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS04575GCF_003122495#LD38_RS04575
RROmpR
16 465-17 160 nt · Forward (+)
LD38_RS04580GCF_003122495#LD38_RS04580
HKClassicCurrent focus
17 150-18 349 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS04580The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2453127
Simplified PFAM architecture for HKOC_2453127
PFAM domain coverage: 64 / 399 aa (16.0%)
1 aa399 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[195-258]
- Domain count: 1
- Matched identifier: HKOC_2453127
- Positioned domains: HisKA 195-258
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS04580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key