1 Response_reg#1
1-107 aa · 107 aa · 50.0% of protein
Raw token
Response_reg:1:3.66e-29:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LD38_RS02630
Response regulator OmpR family
Agathobacter rectalis · GCF_003122495
ClassRRTypeOmpRLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003122495#LD38_RS02630Stable P2CS identifier used across views.
GenomeGCF_003122495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 214 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
138-210 aa · 73 aa · 34.1% of protein
Raw token
Trans_reg_C:138:4.61e-26:210:77:77- Raw architecture: Response_reg:1:3.66e-29:107:108:111#Trans_reg_C:138:4.61e-26:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003122495::NZ_JRFS01000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span345584-347655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLD38_02680RefSeq proteinWP_306742667.1
Context group ID
GCF_003122495::NZ_JRFS01000002.1::G00025Context members
LD38_RS02625LD38_RS02630
Partner locus tags
LD38_RS02625LD38_RS02630
Partner old locus tags
LD38_02675LD38_02680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306742667.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLD38_RS02630Primary locus identifier stored in the genes table.
Old locus tagLD38_02680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRFS01000002.1Sequence record reported by the local genomic context database.
Genomic interval347 011-347 655 nt645 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span345 584-347 655 ntGCF_003122495::NZ_JRFS01000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003122495::NZ_JRFS01000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRFS01000002.1All displayed genes belong to this local TCS context.
Neighborhood span345 584-347 655 nt2 072 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 584 nt347 655 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LD38_RS02625GCF_003122495#LD38_RS02625
HKClassic
345 584-347 014 nt · Reverse (-)
LD38_RS02630GCF_003122495#LD38_RS02630
RROmpRCurrent focus
347 011-347 655 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003122495#LD38_RS02630The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1940318
Simplified PFAM architecture for RROC_1940318
PFAM domain coverage: 179 / 214 aa (83.6%)
1 aa214 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-107] | Trans_reg_C[138-210]
- Domain count: 2
- Matched identifier: RROC_1940318
- Positioned domains: Response_reg 2-107 ; Response_reg 2-107 ; Trans_reg_C 138-210 ; Trans_reg_C 138-210
Cluster members and taxonomy
Representative gene: GCF_003122495#LD38_RS02630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003122495
AssemblyASM312249v1 · Contighaploid
Genome composition3 345 225 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 40 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key