1 Response_reg#1
3-88 aa · 86 aa · 37.2% of protein
Raw token
Response_reg:3:0.0000000269:88:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U54_RS11580
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_003024685
ClassRRTypeLytTRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003024685#C7U54_RS11580Stable P2CS identifier used across views.
GenomeGCF_003024685Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 231 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-218 aa · 85 aa · 36.8% of protein
Raw token
LytTR:134:0.000000000000253:218:90:98- Raw architecture: Response_reg:3:0.0000000269:88:93:111#LytTR:134:0.000000000000253:218:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003024685::NZ_PYLQ01000020.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22745-23440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U54_11570RefSeq proteinWP_107030402.1
Context group ID
GCF_003024685::NZ_PYLQ01000020.1::G00014Context members
C7U54_RS11580
Partner locus tags
C7U54_RS11580
Partner old locus tags
C7U54_11570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107030402.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FSQ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FSQ9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U54_RS11580Primary locus identifier stored in the genes table.
Old locus tagC7U54_11570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLQ01000020.1Sequence record reported by the local genomic context database.
Genomic interval22 745-23 440 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 745-23 440 ntGCF_003024685::NZ_PYLQ01000020.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024685::NZ_PYLQ01000020.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLQ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span22 745-23 440 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 745 nt23 440 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7U54_RS11580GCF_003024685#C7U54_RS11580
RRLytTRCurrent focus
22 745-23 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS11580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1167116
Simplified PFAM architecture for RROC_1167116
PFAM domain coverage: 196 / 231 aa (84.8%)
1 aa231 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[138-222]
- Domain count: 2
- Matched identifier: RROC_1167116
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 138-222 ; LytTR 138-222
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS11580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_003024685
AssemblyASM302468v1 · Contighaploid
Genome composition2 793 685 bp · 29,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 59 · HK 21 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key