1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:7.52e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7U54_RS00700
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_003024685
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003024685#C7U54_RS00700Stable P2CS identifier used across views.
GenomeGCF_003024685Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 221 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-219 aa · 77 aa · 34.8% of protein
Raw token
Trans_reg_C:143:5.07e-19:219:80:77- Raw architecture: Response_reg:4:7.52e-32:112:111:111#Trans_reg_C:143:5.07e-19:219:80:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003024685::NZ_PYLQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span134051-135657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7U54_00700RefSeq proteinWP_048923347.1
Context group ID
GCF_003024685::NZ_PYLQ01000001.1::G00003Context members
C7U54_RS00700C7U54_RS00705
Partner locus tags
C7U54_RS00700C7U54_RS00705
Partner old locus tags
C7U54_00700C7U54_00705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048923347.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3G6Z3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3G6Z3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7U54_RS00700Primary locus identifier stored in the genes table.
Old locus tagC7U54_00700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PYLQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval134 051-134 716 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 051-135 657 ntGCF_003024685::NZ_PYLQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003024685::NZ_PYLQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PYLQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span134 051-135 657 nt1 607 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 051 nt135 657 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C7U54_RS00700GCF_003024685#C7U54_RS00700
RROmpRCurrent focus
134 051-134 716 nt · Forward (+)
C7U54_RS00705GCF_003024685#C7U54_RS00705
HKClassic
134 704-135 657 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS00700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1686397
Simplified PFAM architecture for RROC_1686397
PFAM domain coverage: 184 / 221 aa (83.3%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-218]
- Domain count: 2
- Matched identifier: RROC_1686397
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 144-218 ; Trans_reg_C 144-218
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS00700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_003024685
AssemblyASM302468v1 · Contighaploid
Genome composition2 793 685 bp · 29,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 59 · HK 21 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key